Imaging · study · 2026
Inference of cell-cell communication in human fetal liver from high definition spatial profiling using Renoir
Listed in NCBI GEO
We developed Renoir, an algorithm for charting the ligand-target activities across a spatial topology.
Description
To validate this method, we generated 10x Genomics Visium HD datasets from human fetal liver samples (13 PCW and 14 PCW) and applied Renoir on these datasets. Renoir identified hepatocyte-macrophage interactions in these samples.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE319nnn/GSE319617 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319617 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1424884 ncbi.nlm.nih.gov/bioproject/PRJNA1424884 ↗
project · from NCBI GEO
- PubMed 42086556 pubmed.ncbi.nlm.nih.gov/42086556 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Homo sapiens · Other
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE319617 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |