Omics · study · 2026
The single-cell transcriptome data of in vitro cultured cells isolated from porcine skeletal muscle.
Listed in NCBI GEO
Porcine muscle-derived stem cells hold significant potential as a resource for both cellular agriculture and regenerative medicine.
Description
In this study, stem cells were isolated from porcine skeletal muscle tissue and cultured in vitro to investigate their transcriptional profiles using single-cell RNA sequencing (scRNA-seq). This high-resolution analysis revealed distinct subpopulations within the cultured cells and provided insights into the molecular dynamics of myogenic differentiation.
The results highlight the heterogeneity of muscle stem cells during in vitro culture and identify key regulatory genes associated with various stages of myogenic commitment. These findings contribute to a deeper understanding of stem cell behavior under culture conditions and offer valuable data for optimizing expansion and differentiation protocols.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE293nnn/GSE293501 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE293501 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1244828 ncbi.nlm.nih.gov/bioproject/PRJNA1244828 ↗
project · from NCBI GEO
- PubMed 42140199 pubmed.ncbi.nlm.nih.gov/42140199 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Sus scrofa
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE293501 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9823 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |