Omics · study · 2026
siNRAS and siDGKH knockdown in NRAS mutant melanoma cells
Listed in NCBI GEO
NRAS mutations occur in 10-30% of cutaneous melanomas and are associated with high tumor mutational burden.
Description
Mutant NRAS signaling drives aberrant cell growth and proliferation, in part, through the activation of the RAF-MEK-ERK1/2 kinase pathway; however, targeted therapies to this pathway have shown limited effectiveness in melanoma patients. The role of other signaling pathways is poorly characterized.
We show that one isoform of diacylglycerol kinase (DGKη), a lipid signaling regulator, is highly expressed in NRAS mutant patient samples. Knockdown of DGKη in NRAS mutant cell lines resulted in significant growth inhibition in vitro, due to decreased cell cycle progression. DGKη was regulated by RAS inhibitors and MEK inhibitors.
Read the rest (1 more)
Transcriptomic data showed downregulation of the estrogen response late signature including decreased CCND1 expression. These data suggest that DGKη mediates cell cycle progression in NRAS mutant melanoma cells and represents a potential therapeutic strategy for these patients.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE312nnn/GSE312301 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE312301 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1372813 ncbi.nlm.nih.gov/bioproject/PRJNA1372813 ↗
project · from NCBI GEO
- PubMed 42163799 pubmed.ncbi.nlm.nih.gov/42163799 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Cancer 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE312301 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |