Omics · study · 2026
Bulk RNA-seq of liver macrophages from naïve and Mr BMT mice
Listed in NCBI GEO
Microglia replacement by bone marrow transplantation (Mr BMT) enables efficient engraftment of donor-derived macrophages in multiple organs beyond the central nervous system.
Description
To investigate the long-term transcriptional consequences of macrophage replacement in peripheral tissues, liver macrophages were isolated from 11.5-month-old naïve and Mr BMT mice and subjected to bulk RNA sequencing. This dataset provides a comprehensive characterization of the transcriptional states of resident and donor-derived liver macrophages and enables the assessment of macrophage adaptation and tissue-specific remodeling following Mr BMT.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE334nnn/GSE334350 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE334350 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1474860 ncbi.nlm.nih.gov/bioproject/PRJNA1474860 ↗
project · from NCBI GEO
- PubMed 42598750 pubmed.ncbi.nlm.nih.gov/42598750 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE334350 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |