Omics · study · 2026
Transcriptional control of liver-resident invariant Natural Killer cell development
Listed in NCBI GEO
We have mapped the developmental biology of liver-resident aGalCer-specific iNKT (LiNKT) cells by using conditional transcription factor gene knockout mice to disrupt cell-to-cell transitions.
Description
We identify the existence of a putative LiNKT precursor that gives rise to LiNKT1 cells in a T-BET-dependent manner, a LiNKT17 subset in a BCL-6 and MAF-dependent manner, and a LiNKT2 subset in a BLIMP-1-dependent manner. The LiNKT1 subset differentiates into three additional subsets (LiNKT1.1, LiNKT1.2 and LiNKT1.3) and two effector LiNKT1.1 subsets.
Upon repetitive ligation of its TCR, the LiNKT2 subset expands and then transdifferentiates into a regulatory TR1-like LiNKT subset that has powerful local anti-inflammatory properties. Thus, the LiNKT cell pool is heterogeneous, composed of various transcriptionally distinct LiNKT subsets, and plastic.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE300nnn/GSE300961 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE300961 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1282754 ncbi.nlm.nih.gov/bioproject/PRJNA1282754 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Genome binding/occupancy profiling by high throughput sequencing · Mus musculus · Other
- From keywords
- Life Sciences
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE300961 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |