Data · study · 2026
GFP ChIL-seq mapping of H3mm15-EGFP chromatin incorporation in transgenic mouse testis
Listed in NCBI GEO
H3mm15 is a testis-specific histone H3 variant whose genomic distribution has remained undefined.
Description
We applied chromatin integration labeling followed by sequencing (ChIL-seq) with an anti-GFP antibody to map H3mm15-EGFP incorporation in testes of transgenic mice expressing the fusion protein under the CAG enhancer/promoter. H3mm15-EGFP signal accumulated preferentially around transcription start sites, and incorporated genes were biased toward the transcriptionally active fraction of the genome.
Non-transgenic littermates, which lack the EGFP fusion protein, were processed in parallel as controls.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE341nnn/GSE341158 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE341158 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1499653 ncbi.nlm.nih.gov/bioproject/PRJNA1499653 ↗
project · from NCBI GEO
Topics
- Stated by source
- Mus musculus · Other
- From keywords
- Life Sciences
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE341158 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |