Omics · study · 2026
Transcriptomic Profiling of SLC and ABC Transporters in the Human Term Placenta
Listed in NCBI GEO
Solute carriers (SLC) and ATP-binding cassette (ABC) transporters are essential for placental solute exchange and fetal protection, yet their transcriptomic profiles in the human placenta remain poorly characterized.
Description
Moreover, although fetal sex influences placental development and function, its impact on transporter expression is yet to be determined. Using RNA sequencing, we profiled SLC and ABC transporter expression in two anatomical regions of healthy term human placentas with balanced fetal sex representation.
In the intervillous region, 276 SLCs were detected, with 40% (110 transporters) expressed at CPM level > than 25. Four transporters—SLC2A1 (GLUT1), SLC44A2 (CTL2), SLC38A2 (SNAT2), and SLC38A1 (SNAT1)—showed the highest expression (CPM > 500). Functional annotation of the 110 top-expressed SLCs (CPM ≥ 25) indicated enrichment of amino acid, metal, and inorganic ion transporters, which together accounted for 32% of these SLCs.
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Xenobiotic, vitamin, sugar, and choline transporters were also represented, and 11% were orphan transporters. Notably, intracellular SLCs localized to the ER/Golgi, mitochondria, and lysosome comprised 37% of the top expressed SLCs. Thirty-seven ABC transcripts were detected in the intervillous region, primarily involved in xenobiotic and lipid transport.
Compared with the intervillous region, 1,676 genes—including 32 SLCs and 2 ABC transporters—were differentially expressed in the decidual region. Although 79 genes in the intervillous region and 117 genes in the decidual region exhibited sexually dimorphic expression, none were SLC transporters. Together, these findings provide a comprehensive transcriptomic map of SLC and ABC transporters in the term human placenta by fetal sex and tissue regions.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE325nnn/GSE325186 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE325186 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1438784 ncbi.nlm.nih.gov/bioproject/PRJNA1438784 ↗
project · from NCBI GEO
- PubMed 42677501 pubmed.ncbi.nlm.nih.gov/42677501 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE325186 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |