Omics · study · 2026
Strand- and replication timing-dependent functions of DNA polymerase η in human DNA replication and mutagenesis [ChIP-Seq]
Listed in NCBI GEO
Efficient eukaryotic DNA replication relies on the coordinated actions of replicative and error-prone polymerases, with the latter providing flexibility at the cost of mutagenesis.
Description
DNA polymerase η (Pol η) is most recognised for tolerating UV-induced DNA damage via translesion synthesis (TLS). However, emerging evidence suggests a broader contribution of error-prone polymerases to DNA synthesis.
To elucidate the roles of Pol η during unperturbed replication, we applied polymerase usage sequencing (Pu-seq) to map its activity genome-wide. Our findings demonstrate that Pol η preferentially participates in lagging-strand replication, consistent with observations in budding yeast. Furthermore, Pol η usage varied throughout S phase, with a pronounced enrichment in late-replicating domains, dependent on PCNA ubiquitylation.
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Under moderate doses of UV, Pol η usage retained its replicative strand bias, which contrasted with the prominent strand bias observed in transcribed regions resulting from asymmetric repair processes. These results reveal that Pol η′s flexibility and intrinsic coupling with replication forks extend beyond TLS in human cells. In cancer genomes, characteristic Pol η mutations are enriched in late-replicating regions and correlate with RAD18 expression, implicating PCNA-mediated Pol η activation in mutagenesis.
Together, these findings reveal an unexpected bias in Pol η usage during unperturbed replication which may represent a key contribution to the mutational burden in the human genome.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE308nnn/GSE308762 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE308762 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1332677 ncbi.nlm.nih.gov/bioproject/PRJNA1332677 ↗
project · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Cancer 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE308762 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |