Data · dataset · 2023
Supplementary data for the article: Study of Arsenophonus symbionts in Hippoboscidae
Listed in Teesside University Research Data Repository
Alignments: 1.
Description
Arsenophonus matrix - concatenated matrix of 57 ortholog sequences (AA) extracted from all available Arsenophonus proteomes (analyzed by PhyML, PhyloBayes and IQ-TREE2) in a fasta format 2. Host mitochondrial matrix - concatenated matrix of 12 mitochondrial genes (NA) extracted from 12 mitochondrial genomes of hippoboscids (analyzed by IQ-TREE2) in a fasta format 3.
Host COI matrix - phylogenetic matrix of COI mitochondrial gene (NA) of 63 taxa of hippoboscids (analyzed by IQ-TREE2) in a fasta format 4. Host nuclear matrix - concatenated matrix of 4 genes (NA) extracted from 10 nuclear genomes of hippoboscids (analyzed by IQ-TREE2) in a fasta format Phylogenetic trees folder: Phylogenetic trees generated by PhyML, PhyloBayes and IQ-TREE2 in a newick format. Annotations folder: Annotations of the complete genomes and genome drafts for the the newly described Arsenophonus symbionts of hippoboscids in gbk format.
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Detailed description of used methods can be found in the Materials and Methods section.
Links
Where it is published
- DOI doi.org/10.17632/8jsd4ds57k.3 ↗
DOI / persistent id · from researchdata tees ac uk
Catalogue records · 1
- OAI-PMH record data.mendeley.com/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Adata… ↗
metadata API · from researchdata tees ac uk
Topics
- From keywords
- Earth & Environmental Science · Genomics · Life Sciences
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Teesside University Research Data Repository | oai:data.mendeley.com/8jsd4ds57k.3 | 11 h ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].anzsrc:field:310509 | mapping · researchdata tees ac uk | vocabulary-mapper@1.0.0 | keywords['Genomics'] |
| concepts[field].local:field:earth-environmental | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| description | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| title | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/title |