Data · dataset · 2026
Supplementary Dataset for: Integrative multi-omics analysis identifies VCAN and ESM1 as candidate cell-type-associated biomarkers of NET-related glomerular injury in diabetic kidney disease
Listed in ScienceDB
Description
This dataset contains the supplementary figures and tables supporting the manuscript titled "Integrative multi-omics analysis identifies VCAN and ESM1 as candidate cell-type-associated biomarkers of NET-related glomerular injury in diabetic kidney disease". The study integrates bulk glomerular transcriptomics, single-cell RNA sequencing (scRNA-seq), and experimental validation (in vitro high-glucose co-culture and in vivo db/db mice) to investigate the role of Neutrophil Extracellular Traps (NETs) in diabetic kidney disease (DKD) and identify candidate biomarkers (VCAN and ESM1).The dataset consists of the following files:1.
Supplementary Figures (S1-S3): Covering batch effect correction, single-cell quality control, UMAP projections, violin plots, robustness/sensitivity analyses of NET-related gene sets, transcriptomic profiles of cell subclusters, and validation of candidate markers.2. Supplementary Table S1: List of differentially expressed genes (DEGs) identified between DKD and control samples.3. Supplementary Table S2: Gene Ontology (GO) enrichment analysis results of the DEGs.4.
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Supplementary Table S3: Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis results of the DEGs.5. Supplementary Table S4: Candidate gene screening results via machine learning (LASSO, Random Forest, and intersection with NET-related genes).6. Supplementary Table S5: List of 89 DKD-contextualized NET-related genes (DKD-NRGs).7.
Supplementary Table S6: Sensitivity analysis of NET gene-set enrichment (bulk GSEA).8. Supplementary Table S7: Primer sequences used for qRT-PCR validation in Mus musculus.9. Supplementary Table S8: Molecular docking prediction results for VCAN and ESM1 targeting compounds (ZINC database).
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.40675 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Medicine & Health · Social Science
- Inferred from text
- Disease 75% · Immunology 70% · RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 75% · Tabular 65%
Provenance · 1 source records, 17 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.40675 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:group:3204 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (70%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:rna-seq | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:tabular | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license_text | source · scidb cn | connector:scidb_cn@1.0.0 | |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |