Omics · study · 2026
Transcriptomic response of human corneal epithelial cells to extracellular vesicles derived from Pseudomonas aeruginosa and Staphylococcus epidermidis
Listed in NCBI GEO
Extracellular vesicles released by bacteria are important mediators of host-microbe communication.
Description
In this study, human corneal epithelial cells (HCE) were exposed to extracellular vesicles derived from Pseudomonas aeruginosa or Staphylococcus epidermidis. RNA sequencing was performed to characterize transcriptional changes induced by bacterial vesicles compared with untreated control cells.
This dataset contains transcriptomic profiles from control cells and cells exposed to bacterial extracellular vesicles. Article available: doi.org/10.3389/fcimb.2026.1899147
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE334nnn/GSE334089 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE334089 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1473703 ncbi.nlm.nih.gov/bioproject/PRJNA1473703 ↗
project · from NCBI GEO
- PubMed 42656460 pubmed.ncbi.nlm.nih.gov/42656460 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE334089 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |