Omics · study · 2026
Changes in sites of open chromatin in muscle stem cells that occur upon knockout of TRF2
Listed in NCBI GEO
Telomeric proteins are present in all mammalian cells protecting chromosomal ends and ensuring organismal homeostasis.
Description
However, it was also suggested that they have additional roles in certain tissues. Muscle stem cells (MuSCs), expressing a pivotal transcription factor Pax7, are fundamental to preserve regenerative capacity of muscle tissue.
Yet, the cell autonomous mechanism that regulates Pax7 expression to maintain MuSC identity is unclear. Here, we uncover that the telomeric protein TRF2 is critical to sustain stem cell identity in adult muscles and is dynamically regulated upon injury. MuSC-specific TRF2 ablation in mice aggravates muscular dystrophy, mimicking closely the severity of the human disease.
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Mechanistically, TRF2 directly binds to the regulatory regions of Pax7 gene and affects its expression. These findings identify a unique non-telomeric TRF2 function essential for transcribing Pax7 gene, a master stem cell regulator of the myogenic lineage, to modulate cellular properties indispensable for stem cell maintenance.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE264nnn/GSE264045 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE264045 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1100596 ncbi.nlm.nih.gov/bioproject/PRJNA1100596 ↗
project · from NCBI GEO
- PubMed 42536731 pubmed.ncbi.nlm.nih.gov/42536731 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Disease 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE264045 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |