Omics · study · 2026
scRNA-seq of bone marrow uncovers the regulatory effect of bone marrow microenvironment on osteoporosis
Listed in NCBI GEO
We have employed a single cell sequencing approach using SeekOne Genomics and Illumina Noveseq X plus platform to study the regulatory effect of bone marrow microenvironment on osteoporosis.
Description
Bone marrow is indispensable for skeletal development, bone remodeling, and the pathogenesis of osteoporosis. It serves not only as a reservoir of osteogenic and osteoclastic precursor cells, but also as a highly specialized microenvironment that directly interfaces with bone tissue.
The bone marrow niche comprises diverse hematopoietic and non-hematopoietic cell populations, which collectively regulate skeletal homeostasis through extensive intercellular communication. This study reveals the heterogeneity of cellular composition and functional differences in the bone marrow niche, as well as their distinct contributions to the progression of osteoporosis.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE343nnn/GSE343407 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE343407 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1511341 ncbi.nlm.nih.gov/bioproject/PRJNA1511341 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Rattus norvegicus
- From keywords
- Life Sciences
- Inferred from text
- Sequencing 75% · Single-cell RNA sequencing 65%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE343407 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10116 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |