Antibiotic perseverance increases the risk of resistance development

Each experiment contains two directories, one containing phase contrast images arranged by positions on the microfluidic device, and the other contains the analysis scripts. The 'Overview.csv' file contains a full description for the conditions in each experiment.

Experiments can be divided into 3 categories: 1. 4h exposure to various antibiotics (E. coli) These are the main experiments within the paper where cells are exposed to various antibiotics at 1/8x, 1/4x, 1/2x and 1x MIC. a) EXP-21-BW5663_LB-1.zip (LB replicate 1) b) EXP-22-BY2422_LB-2.zip (LB replicate 2) c) EXP-21-BW5667_CAR-1.zip (CAR replicate 1) d) EXP-22-BY1020_CAR-2.zip (CAR replicate 2) e) EXP-21-BT2897_CRO-1.zip (CRO replicate 1) f) EXP-22-BY2425_CRO-2.zip (CRO replicate 2) g) EXP-21-BY1007_CHL-1.zip (CHL replicate 1) h) EXP-22-BY1043_CHL-2.zip (CHL replicate 2) i) EXP-21-BT2896_CIP-1.zip (CIP replicate 1) j) EXP-22-BY2424_CIP-2.zip (CIP replicate 2) k) EXP-21-BW5664_GEN-1.zip (GEN replicate 1) l) EXP-22-BY1022_GEN-2.zip (GEN replicate 2) m) EXP-21-BW5666_NIT-1.zip (NIT replicate 1) n) EXP-22-BY2419_NIT-2.zip (NIT replicate 2) o) EXP-21-BT2898_RIF-1.zip (RIF replicate 1) p) EXP-21-BY1000_RIF-2.zip (RIF replicate 2) q) EXP-21-BW5661_SPT-1.zip (SPT replicate 1) r) EXP-21-BY1019_SPT-2.zip (SPT replicate 2) s) EXP-21-BW5658_TET-1.zip (TET replicate 1) t) EXP-22-BY2421_TET-1.zip (TET replicate 2) 2. 17h exposure to rifampicin (E. coli, S. enterica) These experiments were performed to test the effect of long-term rifampicin exposure on Escherichia coli and Salmonella enterica. a) EXP-21-BT2899.zip (E. coli) b) EXP-21-BY1015.zip (S. enterica) 3.