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Omics · study · 2026

The effect of SATB2, circ3915 on gene expression in arsenic-transformed BEAS2B lung epithelial cells [RNA-seq; SATB2 shRNA]

Listed in NCBI GEO

Even though epigenetic factors contribute to oncogenesis, most human cancer models still assume that disease originates from driver DNA mutations.

Description

Thus, it is still unclear if non-genetic mechanisms are sufficient to trigger malignant transformation. Chronic, low-dose exposure to inorganic arsenic is known to cause lung malignancies, yet arsenic at low levels does not induce point mutations.

Arsenic exposure upregulates Special AT-rich binding protein 2 (SATB2), a chromatin organizer that reprograms cell-specific and/or developmentally-sensitive gene networks, along with a SATB2-derived circRNA, circ3915. Here we show circ3915 and SATB2 work together to drive mutant KRAS-like gene expression patterns during arsenic-mediated transformation of BEAS2B cells. Thus, oncogenic pathways can be activated in mammalian cells without pre-disposing mutations in oncogenes or epigenetic regulators.

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From keywords
Life Sciences
Inferred from text
Cancer 75% · Disease 75% · RNA sequencing 65%
Provenance · 1 source records, 10 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE27821713 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[disease].local:disease:cancerenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[disease].local:disease:diseaseenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[modality].local:modality:rna-seqenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (65%)
concepts[organism].NCBITaxon:9606source · NCBI GEOconnector:ncbi_geo@1.0.0/taxon
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title