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Data · dataset · 2024

Supplementary Dataset for the article: High-quality morphological, genomic and transcriptomic data for the small-spotted catshark Scyliorhinus canicula

Listed in data.InDoRES

Description

This series of datasets comes as the Supplementary Datasets in manuscript "The sensory shark: high-quality morphological, genomic and transcriptomic data for the small-spotted catshark Scyliorhinus canicula reveal the molecular bases of sensory organ evolution in jawed vertebrates" accepted in MBE and available in BioRxiv doi 2024.05.23.595469 and is composed of: SDataset1_EmbryoZscore.csv (csv file, ';' as separator: Z-scores for all genes in the comparison between embryonic stages) ; SDataset2_EmbryoAutocorrelation.csv (csv file, ';' as separator: autocorrelation values for all genes in the comparison between embryonic stages) ; SDataset2_cluster1.csv (csv file, ';' as separator: list of genes contained in cluster 1 with details of their Zscore and TPM in embryonic stages) ; SDataset2_cluster2.1.csv (csv file, ';' as separator: list of genes contained in cluster 2.1 with details of their Zscore and TPM in embryonic stages) ; SDataset2_cluster2.2.csv (csv file, ';' as separator: list of genes contained in cluster 2.2 with details of their Zscore and TPM in embryonic stages) ; SDataset2_cluster2.3.csv (csv file, ';' as separator: list of genes contained in cluster 2.3 with details of their Zscore and TPM in embryonic stages) ; SDataset2_cluster2.4.csv (csv file, ';' as separator: list of genes contained in cluster 2.4 with details of their Zscore and TPM in embryonic stages) ; SDataset4-AdultZscore.csv (csv file, ';' as separator: Z-scores for all genes in the comparison between adult tissues) ; SDataset5 including 25 files named SDataset5_*organs.csv: GOterm association analysis in each 25 adult tissues (csv files, ';' as separator) ; SDataset6_videoFrontal (.mp4 file Video to see olfactory nerve, frontal view); SDataset7_videoVentral (.mp4 file Video to see olfactory nerve, ventral view); SDataset8 including SDataset8_AOL.csv, SDataset8_BrainOlf.csv and SDataset8_Eye.csv (csv file, ';' as separator: tables of the Top-50 genes in the ampullae of Lorenzini (AOL); brain and olfactory epithelium; and eye, respectively); SDataset9_allTPM.cvs (csv file, ';' as separator: Transcript Per Kilobase Million values (TPMs) for all genes and in all tissues) ; SDataset10_allZscores.csv (csv file, ';' as separator: Z-scores for all genes in the comparison between all tissues).

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Inferred from text
Video 75%
Provenance · 1 source records, 11 field assertions
SourceKeyLast seenRaw
data.InDoRESdoi:10.48579/PRO/B8OJ7Y9 d agoJSON v1
FieldAssertionExtractorEvidence
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concepts[modality].local:modality:videoenrichment · data indores frkeyword-concept-rules@1.0.0title+description (75%)
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