Data · dataset · 2024
Supplementary Dataset for the article: High-quality morphological, genomic and transcriptomic data for the small-spotted catshark Scyliorhinus canicula
Listed in data.InDoRES
Description
This series of datasets comes as the Supplementary Datasets in manuscript "The sensory shark: high-quality morphological, genomic and transcriptomic data for the small-spotted catshark Scyliorhinus canicula reveal the molecular bases of sensory organ evolution in jawed vertebrates" accepted in MBE and available in BioRxiv doi 2024.05.23.595469 and is composed of: SDataset1_EmbryoZscore.csv (csv file, ';' as separator: Z-scores for all genes in the comparison between embryonic stages) ; SDataset2_EmbryoAutocorrelation.csv (csv file, ';' as separator: autocorrelation values for all genes in the comparison between embryonic stages) ; SDataset2_cluster1.csv (csv file, ';' as separator: list of genes contained in cluster 1 with details of their Zscore and TPM in embryonic stages) ; SDataset2_cluster2.1.csv (csv file, ';' as separator: list of genes contained in cluster 2.1 with details of their Zscore and TPM in embryonic stages) ; SDataset2_cluster2.2.csv (csv file, ';' as separator: list of genes contained in cluster 2.2 with details of their Zscore and TPM in embryonic stages) ; SDataset2_cluster2.3.csv (csv file, ';' as separator: list of genes contained in cluster 2.3 with details of their Zscore and TPM in embryonic stages) ; SDataset2_cluster2.4.csv (csv file, ';' as separator: list of genes contained in cluster 2.4 with details of their Zscore and TPM in embryonic stages) ; SDataset4-AdultZscore.csv (csv file, ';' as separator: Z-scores for all genes in the comparison between adult tissues) ; SDataset5 including 25 files named SDataset5_*organs.csv: GOterm association analysis in each 25 adult tissues (csv files, ';' as separator) ; SDataset6_videoFrontal (.mp4 file Video to see olfactory nerve, frontal view); SDataset7_videoVentral (.mp4 file Video to see olfactory nerve, ventral view); SDataset8 including SDataset8_AOL.csv, SDataset8_BrainOlf.csv and SDataset8_Eye.csv (csv file, ';' as separator: tables of the Top-50 genes in the ampullae of Lorenzini (AOL); brain and olfactory epithelium; and eye, respectively); SDataset9_allTPM.cvs (csv file, ';' as separator: Transcript Per Kilobase Million values (TPMs) for all genes and in all tissues) ; SDataset10_allZscores.csv (csv file, ';' as separator: Z-scores for all genes in the comparison between all tissues).
Links
Where it is published
- Dataverse dataset page data.indores.fr/dataset.xhtml?persistentId=doi%3A10.48579%2FPRO%2FB8OJ7Y ↗
landing page · from data indores fr
- DOI doi.org/10.48579/pro/b8oj7y ↗
DOI / persistent id · from data indores fr
Catalogue records · 1
- Dataverse API data.indores.fr/api/datasets/:persistentId/?persistentId=doi%3A10.48579%2FPRO%… ↗
metadata API · from data indores fr
Topics
- Stated by source
- Medicine, Health and Life Sciences
- From keywords
- Genomics · Life Sciences · Medicine & Health
- Inferred from text
- Video 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| data.InDoRES | doi:10.48579/PRO/B8OJ7Y | 9 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:field:310509 | mapping · data indores fr | vocabulary-mapper@1.0.0 | keywords['Genomics'] |
| concepts[field].dataverse_subject:medicine-health-and-life-sciences | source · data indores fr | connector:data_indores_fr@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · data indores fr | connector:data_indores_fr@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · data indores fr | connector:data_indores_fr@1.0.0 | /subjects |
| concepts[modality].local:modality:video | enrichment · data indores fr | keyword-concept-rules@1.0.0 | title+description (75%) |
| created_date | source · data indores fr | connector:data_indores_fr@1.0.0 | |
| description | source · data indores fr | connector:data_indores_fr@1.0.0 | /description |
| publication_date | source · data indores fr | connector:data_indores_fr@1.0.0 | |
| title | source · data indores fr | connector:data_indores_fr@1.0.0 | /name |
| updated_date | source · data indores fr | connector:data_indores_fr@1.0.0 | |
| version_label | source · data indores fr | connector:data_indores_fr@1.0.0 |