Omics · dataset · 2021
10X spliced and unspliced gene count matrices
Listed in CaltechDATA
Description
We processed a set of 10X datasets using kallisto|bustools. The archive contains filtered loom files. The scripts used to generate these files are provided at github.com/pachterlab/GP_2021_3/tree/master/processing_scripts.
Links
Where it is published
- CaltechDATA record data.caltech.edu/records/3037c-d1863 ↗
landing page · from data caltech edu
- DOI doi.org/10.22002/d1.2017 ↗
DOI / persistent id · from data caltech edu
Catalogue records · 1
- InvenioRDM API data.caltech.edu/api/records/3037c-d1863 ↗
metadata API · from data caltech edu
Topics
- Stated by source
- single-cell RNA sequencing
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Single-cell RNA sequencing · Social Science
- Inferred from text
- Bioinformatics and computational biology 70%
Provenance · 1 source records, 14 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| CaltechDATA | 3037c-d1863 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].anzsrc:group:3102 | enrichment · data caltech edu | taxonomy-embedding@1.0.0 | title+keywords+description (70%) |
| concepts[field].local:field:earth-environmental | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:engineering | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:humanities | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:social-science | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[modality].local:modality:single-cell-rna-seq | mapping · data caltech edu | vocabulary-mapper@1.0.0 | keywords['single-cell RNA sequencing'] |
| concepts[topic].invenio_subject:data_caltech_edu:single-cell-rna-sequencing | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| description | source · data caltech edu | connector:data_caltech_edu@1.0.0 | /metadata/description |
| publication_date | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| title | source · data caltech edu | connector:data_caltech_edu@1.0.0 | /metadata/title |
| updated_date | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| version_label | source · data caltech edu | connector:data_caltech_edu@1.0.0 |