Raster · study · 2026
CRISP enables comparisons of image-based spatial transcriptomic segmentation quality across ten organs
Listed in NCBI GEO
Description
This dataset comprises 10x Xenium image-based spatial transcriptomics data from a mouse tissue microarray (TMA) containing ten organs (brain, female reproductive tract, heart, kidney, large intestine, liver, lung, small intestine, spleen, and stomach) collected from C57BL/6J mice treated with lipid nanoparticle-delivered β-Galactosidase mRNA or vehicle control and profiled with a 5,006-gene panel.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE328nnn/GSE328169 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE328169 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1454030 ncbi.nlm.nih.gov/bioproject/PRJNA1454030 ↗
project · from NCBI GEO
Topics
- Stated by source
- Mus musculus · Other
- From keywords
- Life Sciences
- Inferred from text
- Heart 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE328169 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[anatomy].local:anatomy:heart | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |