Data · dataset · 2020
Table 1 Extended data: Ubiquitylome of developing cortical neurons
Listed in CaltechDATA
Ubiquitylome of four mouse genotypes and netrin treatment in triplicate.
Description
These data is composed of a list of 854 unique proteins and 1454 unique peptides that were ubiquitylated during early neuronal development. The data are represented in sheets that include gene names of identified proteins with NCBI identifiers; the peptide sequences identified by MS; the peptides with ubiquiylated lysine; the number of glycine adducts per peptide; the types of samples (genotype and netrin treatment) and replicates; and median subtracted intensity before and after batch correction.
Links
Where it is published
- CaltechDATA record data.caltech.edu/records/w88h2-2q264 ↗
landing page · from data caltech edu
- DOI doi.org/10.22002/d1.1678 ↗
DOI / persistent id · from data caltech edu
Catalogue records · 1
- InvenioRDM API data.caltech.edu/api/records/w88h2-2q264 ↗
metadata API · from data caltech edu
Topics
- Stated by source
- cortical neurons · E3 ubiquitin ligase · mouse · TRIM67 · TRIM9 · ubiquitin · ubiquitylation · ubiquitylome
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Mus musculus · Social Science
- Inferred from text
- Biochemistry and cell biology 69% · Tabular 65%
Provenance · 1 source records, 22 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| CaltechDATA | w88h2-2q264 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].anzsrc:group:3101 | enrichment · data caltech edu | taxonomy-embedding@1.0.0 | title+keywords+description (69%) |
| concepts[field].local:field:earth-environmental | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:engineering | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:humanities | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[field].local:field:social-science | mapping · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[modality].local:modality:tabular | enrichment · data caltech edu | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10090 | mapping · data caltech edu | vocabulary-mapper@1.0.0 | keywords['mouse'] |
| concepts[topic].invenio_subject:data_caltech_edu:cortical-neurons | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:e3-ubiquitin-ligase | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:mouse | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:trim67 | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:trim9 | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:ubiquitin | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:ubiquitylation | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| concepts[topic].invenio_subject:data_caltech_edu:ubiquitylome | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| description | source · data caltech edu | connector:data_caltech_edu@1.0.0 | /metadata/description |
| publication_date | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| title | source · data caltech edu | connector:data_caltech_edu@1.0.0 | /metadata/title |
| updated_date | source · data caltech edu | connector:data_caltech_edu@1.0.0 | |
| version_label | source · data caltech edu | connector:data_caltech_edu@1.0.0 |