Omics · study · 2026
Hypertonicity induced changes in gene expression in mpkCCD cells and the contribution of NFAT5 activity on these changes.
Listed in NCBI GEO
The corticomedullary osmotic gradient between renal cortex and medulla induces a specific spatial gene expression pattern.
Description
The factors that control these differences are not fully addressed. The hypertonic environment leads to activation of the nuclear factor of activated T-cells 5 (NFAT5), which regulates the expression of osmoprotective genes.
While NFAT5 function under hypertonic conditions has been extensively studied, its contribution to basal gene 28 regulation remains incompletely understood. We used murine principal kidney cortical collecting duct (mpkCCD) cells and induced functional deletion of NFAT5 and performed gene expression profiling to identify genes that are differentially expressed under isotonic and hypertonic cell culture conditions. Hypertonic stress induced extensive transcriptional changes in control cells, which were markedly altered in NFAT5-deficient cells.
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Furthermore, the comparison of the mpkCCD transcriptomes with gene expression profiles from renal cortex and inner medulla of control and principal cell-specific NFAT5 knockout mice revealed partial overlap in hypertonicity-associated and NFAT5-dependent gene expression patterns. In both conditions, the expression of known NFAT5 target genes, like Aqp2 or Ranbp3l, was downregulated. These findings support the use of mpkCCD cells as a complementary model to study NFAT5-associated gene regulation under controlled in vitro conditions.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE326nnn/GSE326713 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE326713 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1446791 ncbi.nlm.nih.gov/bioproject/PRJNA1446791 ↗
project · from NCBI GEO
- PubMed 42322003 pubmed.ncbi.nlm.nih.gov/42322003 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE326713 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |