Excel · study · 2026
Identification of MHC-I regulators in HPV+ HNC cells and HPV oncoprotein-expressing keratinocytes.
Listed in NCBI GEO
Recognition of tumor antigens presented by major histocompatibility complex class I (MHC-I) on cancer cells is critical for the antitumor T cell response.
Description
Accordingly, MHC-I antigen presentation is frequently dysregulated in cancer, including human papillomavirus-positive head and neck cancer (HPV+ HNC), as a strategy for immune evasion. Downregulation of MHC-I is thought to be a major obstacle in HPV+ HNC treatment, particularly for non-responders to immunotherapies.
We recently found that membrane-associated RING-CH finger 8 (MARCHF8) induced by the HPV oncoproteins ubiquitinates MHC-I. However, the mechanism of how ubiquitinated MHC-I is degraded in HPV+ HNC remains to be elucidated. To identify key regulators of MHC-I expression, we performed genome-wide CRISPR/Cas9 knockout screens in two HPV+ HNC cell lines (SCC90 and SCC152) and normal keratinocytes expressing the HPV oncoprotein E6 and E7 (N/Tert-1 E6E7).
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Among the top pathways enriched in the negative regulators were genes involved in the autophagy pathway, a catabolic process that recycles cellular components. Futher studies demonstrated that inhibition of autophagy, specifically autophagy initiation, restored surface MHC-I expression in HPV+ HNC cells. Taken together, these studies have identified a mechanism of immune evasion in HPV+ HNC through identifying genes involved in MHC-I protein degradation by autophagy.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE324nnn/GSE324388 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE324388 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1434536 ncbi.nlm.nih.gov/bioproject/PRJNA1434536 ↗
project · from NCBI GEO
Topics
- Stated by source
- Homo sapiens · Other
- From keywords
- Life Sciences
- Inferred from text
- Cancer 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE324388 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |