Text · study · 2026
Translatomic analysis of the wild-type (WT) and total body eIF2A-KO mouse liver tissue
Listed in NCBI GEO
Translation initiation in eukaryotes is a complex process involving more than 12 initiation factors.
Description
The heterotrimeric factor eIF2 (α, β, γ) is the primary mediator of methionyl-initiator tRNA (Met-tRNAi) delivery to the 40S ribosomal subunit. eIF2A is an alternative factor capable of mediating this delivery and is thought to function in non-canonical translation initiation pathways. To investigate the physiological role of eIF2A in mammals, our laboratory generated a total eIF2A knockout (KO) mouse model.
Although eIF2A-KO mice are viable, they exhibit features of metabolic syndrome. To examine translatomic alterations associated with eIF2A deficiency, we performed ribosome profiling on liver tissues from wild-type (WT) and eIF2A-KO mice. High-throughput sequencing was used to identify affected molecular pathways and to define the role of eIF2A in metabolic homeostasis.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE334nnn/GSE334597 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE334597 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1476006 ncbi.nlm.nih.gov/bioproject/PRJNA1476006 ↗
project · from NCBI GEO
- PubMed 42712787 pubmed.ncbi.nlm.nih.gov/42712787 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Mus musculus · Other
- From keywords
- Life Sciences
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE334597 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |