Data · dataset · 2026
Data for: Genome-wide analysis of the LRR-RLK genes in yerba mate (Ilex paraguariensis)
Listed in ZivaHub and Deakin Research Online and DMU Figshare — shown once because both records carry DOI 10.6084/m9.figshare.32306913.v1
<p dir="ltr">Yerba mate is a significant crop for culture and industries across southern South America.
Description
However, increasing environmental challenges currently threaten its productivity, ecological stability, and socioeconomic role. We, therefore, focused on broadly characterize the LRR-RLK genes in yerba mate predicting their potential roles in development, growth, and stress response, providing a molecular basis for crop management.
We identified 226 LRR-RLK genes (94.7% on 20 chromosomes), diverse in structural features, but displaying the typical protein domain arrangement (SP│LRR│TM│K). Phylogenetic analysis classified these genes into 25 distinct homology groups, consistent with Arabidopsis. Subsequent functional and regulatory analyses included gene ontology annotation, subcellular localization, promoter regions survey, and expression profiling.
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Most LRR-RLK genes were annotated to key processes such as transferase activity, signaling, development, reproduction, and defense response, and predicted primarily to the plasma membrane and chloroplast. Promoters mostly harbored binding sites for ten transcription factor families associated with diverse stresses, hormones, growth, and development. Near 59% of LRR-RLK genes exhibited expression levels suggesting a basal regulatory role.
Furthermore, 96.1% of LRR-RLK genes were differentially expressed under conditions of plant disease, drought stress, and specific tissue comparison. These findings provide a comprehensive foundation for selecting candidate genes involved in stress adaptation.</p>
Links
Where it is published
- DOI doi.org/10.6084/m9.figshare.32306913.v1 ↗
DOI / persistent id · from zivahub uct ac za
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from zivahub uct ac za
Topics
- From keywords
- Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Genomics and transcriptomics · Genomics and transcriptomics · Genomics and transcriptomics · Life Sciences · Life Sciences · Life Sciences
- Inferred from text
- Disease 75%
Provenance · 3 source records, 15 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ZivaHub | oai:figshare.com:article/32306913 | 6 d ago | JSON v1 |
| Deakin Research Online | oai:figshare.com:article/32306913 | 6 d ago | JSON v1 |
| DMU Figshare | oai:figshare.com:article/32306913 | 6 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · zivahub uct ac za | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:field:310204 | mapping · zivahub uct ac za | vocabulary-mapper@1.0.0 | keywords['Genomics and transcriptomics'] |
| concepts[field].anzsrc:field:310204 | mapping · dro deakin edu au | vocabulary-mapper@1.0.0 | keywords['Genomics and transcriptomics'] |
| concepts[field].anzsrc:field:310204 | mapping · figshare dmu ac uk | vocabulary-mapper@1.0.0 | keywords['Genomics and transcriptomics'] |
| concepts[field].local:field:earth-environmental | mapping · figshare dmu ac uk | connector:figshare_dmu_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · dro deakin edu au | connector:dro_deakin_edu_au@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare dmu ac uk | connector:figshare_dmu_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · dro deakin edu au | connector:dro_deakin_edu_au@1.0.0 | |
| description | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/description |
| license | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/rights |
| publication_date | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | |
| title | source · zivahub uct ac za | connector:zivahub_uct_ac_za@1.0.0 | /metadata/dc/title |