Table · dataset · 2026
Calcium imaging analysis pipeline
Listed in figshare and Loughborough Research Repository — shown once because both records carry DOI 10.6084/m9.figshare.33995778.v1
Description
<p dir="ltr">This repository contains the custom Python analysis routines and processing pipelines supporting the longitudinal single-cell calcium imaging data in:"Social Stress in Adolescence: A Longitudinal Analysis of Early Predictors and Outcomes" The pipeline processes in vivo single-cell calcium fluorescence data recorded via head-mounted UCLA Miniscopes (v3) in freely behaving mice undergoing operant conditioning and Go/No-Go cognitive testing.
It bridges motion correction and spatial cell extraction from the Minian analysis pipeline with behavioral TTL synchronization, trial alignment, neural event deconvolution, cell tuning classification, and pairwise ensemble cross-correlation analysi</p>
Links
Where it is published
- DOI doi.org/10.6084/m9.figshare.33995778.v1 ↗
DOI / persistent id · from figshare com
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from figshare com
Topics
- From keywords
- Astronomy & Astrophysics · Behavioural neuroscience · Behavioural neuroscience · Chemistry · Chemistry · Cognitive neuroscience · Cognitive neuroscience · Computer Science & AI · Computer Science & AI · Earth & Environmental Science · Earth & Environmental Science · Economics & Finance · Economics & Finance · Engineering · Engineering · Humanities · Humanities · Life Sciences · Life Sciences · Materials Science · Mathematics & Statistics · Medicine & Health · Medicine & Health · Mus musculus · Mus musculus · Ocean & Atmospheric Science · Psychology & Behavioral Science · Psychology & Behavioral Science · Social and affective neuroscience · Social and affective neuroscience · Social Science · Social Science
- Inferred from text
- Imaging 75% · Longitudinal study 65%
Provenance · 2 source records, 39 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| figshare | oai:figshare.com:article/33995778 | 5 d ago | JSON v1 |
| Loughborough Research Repository | oai:figshare.com:article/33995778 | 5 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].anzsrc:field:520202 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Behavioural neuroscience'] |
| concepts[field].anzsrc:field:520202 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Behavioural neuroscience'] |
| concepts[field].anzsrc:field:520203 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Cognitive neuroscience'] |
| concepts[field].anzsrc:field:520203 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Cognitive neuroscience'] |
| concepts[field].anzsrc:field:520207 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Social and affective neuroscience'] |
| concepts[field].anzsrc:field:520207 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Social and affective neuroscience'] |
| concepts[field].local:field:astronomy | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:humanities | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:materials-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:mathematics-statistics | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:psychology-behavioral | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:psychology-behavioral | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:social-science | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:social-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[method].local:method:longitudinal-study | enrichment · figshare com | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:imaging | enrichment · figshare com | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['mice'] |
| concepts[organism].NCBITaxon:10090 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['mice'] |
| description | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/description |
| license | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/rights |
| publication_date | source · figshare com | connector:figshare_com@1.0.0 | |
| title | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/title |