PICTographPlus: Data Sets and Resources

All the code are freely available at github.com/KarchinLab/pictographPlus and github.com/KarchinLab/PICTographPlus_manuscript. Benchmarking dataset ------------------------------------------------------------------------------- all benchmarking scripts and data information can be found in benchmarking folder. A README.md is provided with detailed instructions.

Case analysis dataset ------------------------------------------------------------------------------- Inputs: CRUK0004_input: input data for TRACERx patient. CRUK0004_SNV.csv: input somatic mutation file CRUK0004_facets.csv: input somatic copy number file CRUK0004_RNA.csv: input RNA read counts MK74_input: input data for Semaan et al. IPMN patient. MK74_snv.csv: input somatic mutation file MK74_cn.csv: input somatic copy number file MK74_rna.csv: input RNA read counts PCSI0380_input: input data for PanCuRx PDAC patient.