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Data · study · 2026

ATR and TopBP1 oppose to control dormant origin activity and overall replication dynamics, providing a first defense against replication stress [OK-seq]

Listed in NCBI GEO

Replication stress, a major feature of cancers, and ensuing genomic instability stem from perturbations of replication fork progression.

Description

The first line of defense against this stress is the recruitment of extra-origins, called dormant, which assists constitutive origins in completing replication. To determine how the DNA replication checkpoint contributes to this compensation process in human cells, we set a dose-response assay that allows quantification of the compensation efficiencies, enabling accurate comparison of cells depleted of relevant proteins.

Results show that ATR activity is essential to dormant origin mobilization. In stark contradiction to what would be expected from its ATR-activating function, TopBP1 represses compensation and acts downstream of ATR. Therefore, our results instead design the TopBP1 function in replisome assembly as key to dormancy.

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Furthermore, Repli-seq and OK-seq data collectively confirm that ATR inactivation prevents dormant origins from firing under stress. Conversely, constitutive origin activity significantly rises in these conditions, attesting of intrinsic differences between dormant and constitutive origins. Altogether, our results elicit a model positing that TopBP1 specifically locks dormant origins at the pre-initiation stage, an intermediate complex in the replisome assembly process.

ATR activation would trigger eviction of TopBP1 from this complex, allowing assembly to proceed and compensation to occur.

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Stated by source
Homo sapiens · Other
From keywords
Life Sciences
Provenance · 1 source records, 7 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE31490014 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:othersource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[organism].NCBITaxon:9606source · NCBI GEOconnector:ncbi_geo@1.0.0/taxon
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title