Data · study · 2026
ATR and TopBP1 oppose to control dormant origin activity and overall replication dynamics, providing a first defense against replication stress [OK-seq]
Listed in NCBI GEO
Replication stress, a major feature of cancers, and ensuing genomic instability stem from perturbations of replication fork progression.
Description
The first line of defense against this stress is the recruitment of extra-origins, called dormant, which assists constitutive origins in completing replication. To determine how the DNA replication checkpoint contributes to this compensation process in human cells, we set a dose-response assay that allows quantification of the compensation efficiencies, enabling accurate comparison of cells depleted of relevant proteins.
Results show that ATR activity is essential to dormant origin mobilization. In stark contradiction to what would be expected from its ATR-activating function, TopBP1 represses compensation and acts downstream of ATR. Therefore, our results instead design the TopBP1 function in replisome assembly as key to dormancy.
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Furthermore, Repli-seq and OK-seq data collectively confirm that ATR inactivation prevents dormant origins from firing under stress. Conversely, constitutive origin activity significantly rises in these conditions, attesting of intrinsic differences between dormant and constitutive origins. Altogether, our results elicit a model positing that TopBP1 specifically locks dormant origins at the pre-initiation stage, an intermediate complex in the replisome assembly process.
ATR activation would trigger eviction of TopBP1 from this complex, allowing assembly to proceed and compensation to occur.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE314nnn/GSE314900 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE314900 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1393102 ncbi.nlm.nih.gov/bioproject/PRJNA1393102 ↗
project · from NCBI GEO
- PubMed 42011787 pubmed.ncbi.nlm.nih.gov/42011787 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Homo sapiens · Other
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE314900 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |