Omics · study · 2026
Single-nucleus RNA sequencing of human trophoblast organoids and endometrial organoids co-culture model
Listed in NCBI GEO
To model the maternal–fetal interface, we co-cultured rotation-derived human trophoblast organoids (hTOr) with human endometrial organoids (hEMO).
Description
Here, we performed single-nucleus RNA sequencing of hEMO mono-culture, hTOr mono-culture, and their co-culture to dissect the transcriptomic landscape of this interaction. Our analysis reveals that hTOr-derived signals drive a metabolic and secretory activation in the endometrial epithelium.
We identified a unique 'Activated' hEMO population emerging specifically upon co-culture, distinct from the LGR5+ homeostatic state. This transition was characterized by a robust upregulation of oxidative phosphorylation and glycolysis, concurrent with sustained proliferation, demonstrating that the trophoblast actively reprograms the endometrium into a hyper-metabolic state.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE324nnn/GSE324114 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE324114 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1433461 ncbi.nlm.nih.gov/bioproject/PRJNA1433461 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE324114 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |