Omics · study · 2026
LPS-Mediated Transcriptional Changes in Myeloid Lineage Cells: Macrophages and Osteoclasts
Listed in NCBI GEO
The NLRP3 inflammasome is a key driver of bone resorption in various inflammatory conditions, ranging from low-grade to high-grade inflammation.
Description
This bone-resorptive activity is mediated by osteoclasts (OCs), which differentiate from macrophages upon exposure to RANKL. While the non-autonomous effects of the inflammasome on the osteoclast lineage are well characterized, its cell-intrinsic (autonomous) role within these cells remains poorly understood.
To address this knowledge gap, we treated mouse bone marrow-derived macrophages (BMDMs) with RANKL and monitored NLRP3 expression during osteoclastogenesis. Surprisingly, NLRP3 expression progressively declined as cells differentiated into osteoclasts, but was restored upon LPS priming. When OC cultures were exposed to LPS followed by nigericin to assess NLRP3 inflammasome activation, we observed robust inflammasome assembly in undifferentiated BMDMs, as expected.
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However, this response was absent in mature OCs and their lineage-committed precursors. To uncover the mechanisms underlying this suppression of NLRP3 activation during differentiation, we performed transcriptomic analysis across the macrophage-to-osteoclast transition, aiming to identify regulatory genes and pathways that may inhibit inflammasome assembly in OCs
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE298nnn/GSE298028 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE298028 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1267131 ncbi.nlm.nih.gov/bioproject/PRJNA1267131 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE298028 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |