Omics · study · 2026
Capturing totipotent-like 8-cell states in vitro with re-activation of endogenous retrovirus HERVL [RNA-seq]
Listed in NCBI GEO
In vitro models of human totipotency offer a powerful platform to dissect the regulatory mechanisms governing zygotic genome activation (ZGA) and early lineage specification.
Description
Although recent protocols have enabled induction of 8-cell-like cells (8CLCs) from human pluripotent stem cells (hPSCs), their inherent heterogeneity and the lack of specific markers for authentic totipotent-like states have impeded the isolation of pure populations and limited mechanistic studies.
To address this, we leveraged the specific activation of an 8-cell-stage endogenous retrovirus HERVL to establish a HERVL-tdTomato/TPRX1-GFP dual-reporter hPSC line. This system enables real-time monitoring and precise isolation of bona fide 8CLCs induced from primed hPSCs. Intriguingly, we demonstrate that the previously utilized TPRX1 reporter marks an intermediate population that subsequently transitions into HERVL-positive 8CLCs, capturing a transcriptional identity closely resembling in vivo 8-cell embryos.
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Critically, knockdown of HERVL impaired 8CLC generation and suppressed a core set of totipotency-associated genes, indicating a cis-acting role for HERVL in activating the 8CLC transcriptional program. Together, our dual-reporter system and mechanistic insights into HERVL function establish a robust framework for modeling human totipotency and advancing the optimization of totipotent-like cell induction.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE309nnn/GSE309040 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE309040 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1333843 ncbi.nlm.nih.gov/bioproject/PRJNA1333843 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE309040 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |