Data · dataset · 2023
Replication Data for: Social modulation of oogenesis and egg-laying in Drosophila melanogaster
Listed in IISH Dataverse
The dataset contains all the raw data and R-script used to produce the figures in the paper.
Description
The Excel document named ‘Raw data.xlsx’ contains the raw data and is composed of one Excel sheet per figure. The three documents ‘deseq2.txt’ contain the three gene expression analysis result of the RNA sequencing (alone vs methoprene, grouped vs methoprene, alone vs grouped).
The 'RNAseq_sample_overview.txt' document and the Excel document named ‘Count matrix.xlsx’ respectively include the RNAseq library information and the read count table of the RNA sequencing. WGCNA_modules.zip includes a total of 20 files (one file per identified gene module) and lists the genes that were assigned to the respective module. Two R-scripts are also provided, one for the RNA sequencing analyses and the other one for all the other raw data of the paper.
Links
Where it is published
- Dataverse dataset page dataverse.nl/dataset.xhtml?persistentId=doi%3A10.34894%2FV5LVF1 ↗
landing page · from datasets iisg amsterdam
- DOI doi.org/10.34894/v5lvf1 ↗
DOI / persistent id · from datasets iisg amsterdam
Catalogue records · 1
- Dataverse API dataverse.nl/api/datasets/:persistentId/?persistentId=doi%3A10.34894%2FV5LV… ↗
metadata API · from datasets iisg amsterdam
Topics
- Stated by source
- Earth and Environmental Sciences
- From keywords
- Drosophila melanogaster · Earth & Environmental Science · Social Science
- Inferred from text
- RNA sequencing 75% · Sequencing 75% · Tabular 65%
Provenance · 1 source records, 13 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| IISH Dataverse | doi:10.34894/V5LVF1 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].dataverse_subject:earth-and-environmental-sciences | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[field].local:field:earth-environmental | mapping · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[field].local:field:social-science | mapping · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[modality].local:modality:rna-seq | enrichment · datasets iisg amsterdam | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · datasets iisg amsterdam | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:tabular | enrichment · datasets iisg amsterdam | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:7227 | mapping · datasets iisg amsterdam | vocabulary-mapper@1.0.0 | keywords['Drosophila melanogaster'] |
| created_date | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | |
| description | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /description |
| publication_date | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | |
| title | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /name |
| updated_date | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | |
| version_label | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 |