Excel · study · 2026
Fibroblast Growth Factor Receptor Signaling in Maturing Osteoblasts Controls Cell-Matrix Interactions Critical for Osteocyte Survival
Listed in NCBI GEO
Inactivation of fibroblast growth factor receptor 1 (FGFR1) in the mature osteoblast lineage using DMP1-CreER to target a floxed allele of Fgfr1 (FGFR1-CKO) results in extensive osteocyte death.
Description
To identify changes in gene expression in response to inactivation of Fgfr1 in vivo, femoral diaphyseal bone was harvested from 16-week-old Control (Fgfr1f/f) and FGFR1-CKO mice following 4 weeks exposure to Tamoxifen and subjected to bulk mRNA sequencing.
RNA sequencing demonstrated reduced expression of extracellular matrix (ECM) genes and neuronal regulatory genes, and differential expression of apoptosis regulatory genes. These data demonstrate that signaling through FGF receptor may be directly required for ECM remodeling and osteocyte projection formation, and loss of FGFR signaling causes retention of an osteoblast-like gene expression signature and apoptosis of bone-embedded cells.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE316nnn/GSE316171 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE316171 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1401751 ncbi.nlm.nih.gov/bioproject/PRJNA1401751 ↗
project · from NCBI GEO
- PubMed 42094430 pubmed.ncbi.nlm.nih.gov/42094430 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE316171 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |