Excel · study · 2026
Whole transcriptome gene expression in Alzheimer's disease (AD) patients [sRNA]
Listed in NCBI GEO
Alzheimer disease (AD) is the most common type of dementia.
Description
It is a progressive disease initially characterized by memory loss and leading to loss of the ability to respond to the environment. Currently, there is no single molecular or imaging test that can establish an AD diagnosis.
A clinical diagnosis is often the results of multiple cognitive tests, spinal fluid or other bodily fluid tests for specific biomarkers and brain imaging, and it is often a diagnosis of exclusion for other diseases. We utilized a whole transcriptome sequencing approach to analyze gene expression in AD patients and control subjects blood samples with the goal of developing a novel panel of biomarkers for the disease. Whole blood sample were collected from 50 AD patients and 50 matched controls.
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AD patients were defined by a clinical diagnosis supported by 3 cognitive tests (MMSE, ADAS, CDR). Healthy donors have an unremarkable clinical history and their scores in the 3 cognitive tests are within normal ranges.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE248nnn/GSE248422 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE248422 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1043723 ncbi.nlm.nih.gov/bioproject/PRJNA1043723 ↗
project · from NCBI GEO
- PubMed 41620770 pubmed.ncbi.nlm.nih.gov/41620770 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Homo sapiens · Non-coding RNA profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Disease 75% · Imaging 75% · RNA sequencing 65% · Sequencing 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE248422 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:non-coding-rna-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:imaging | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |