Omics · study · 2026
Establishment and Characterization of a New Immortalized Human Oral Keratinocyte (HOK) Cell Line Harboring Various TP53 Mutations
Listed in NCBI GEO
Head and neck squamous cell carcinoma (HNSCC) is characterized by frequent TP53 mutations, which include gain-of-function (GOF) variants that drive tumor progression and chemoresistance.
Description
While genomic evidence across multiple invasive and metastatic specimens indicates TP53 loss or mutation occurs relatively early in HNSCC carcinogenesis, it has been difficult to discern how TP53 mutation drives further tumor evolution and influences the tumor microenvironment.
To address this question, we generated an immortalized human oral keratinocyte (HOK) cell line expressing various TP53 mutant forms to determine how mutations impact functional and genomic characteristics of HOKs that can in turn drive their evolution to neoplastic cells. Key results revealed significant phenotypic and molecular divergence: high-risk lines exhibited enhanced invasiveness and chemoresistance compared to low-risk counterparts.
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Weighted gene co-expression network analysis (WGCNA) linked high-risk mutations to pro-metastatic pathways and stress-response signatures, with the C238F line uniquely enriched for p53-related GOF mechanisms.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE305nnn/GSE305620 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305620 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1307293 ncbi.nlm.nih.gov/bioproject/PRJNA1307293 ↗
project · from NCBI GEO
- PubMed 41319400 pubmed.ncbi.nlm.nih.gov/41319400 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Cancer 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE305620 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |