Omics · study · 2026
Ozone exposure in the fibrotic Surfactant Protein-C mutant lung
Listed in NCBI GEO
Environmental exposure and genetic mutations are principal contributors in the initiation and exacerbation of fibrogenic injury.
Description
We have established a murine model of lung remodeling triggered by inducible expression of the most common PF-linked mutation in the Surfactant Protein-C gene (SP-C). The mutation at position 73 is the most common among >60 clinically identified.
We have previously deposited a single-cell sequencing dataset of lung tissues at times coordinated with peak inflammation (14 d post induction) and established fibrotic remodeling (42 d post induction). This work allowed annotation of fibrogenic signals emanating from the epihtelial, mesenchymal, and immune compartment. We then set aim to expand our investigation to examine the effects of ozone exposure in the fibrotic lung (42 days post mutant induction).
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Ozone is a ubiquitous environmental toxicant known to cause focal parenchymal injury and transient myeloid inflammation. Fibrotic mice exposed to ozone (0.8 ppm, 3 h hours) promoted shifts in myeloid and lymphoid inflammatory cells, measured by flow cytometry. This transcriptomics dataset show aberrant activation among monocyte-derived macrophages.
Together, these results suggest that ozone exposure in the fibrotic lung is linked to non-canoncial activation of peripherally-derived populations and that these cells should be further examined for their pro-fibrotic phenotype.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE343nnn/GSE343116 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE343116 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1510548 ncbi.nlm.nih.gov/bioproject/PRJNA1510548 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE343116 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |