Omics · study · 2026
RNA-seq profiling of spinal cord tissues from SCI and ovariectomy-associated osteoporotic SCI mouse models
Listed in NCBI GEO
Bulk RNA-seq was performed on 12 female 8-week-old C57BL/6J wild-type mouse spinal cord samples to compare transcriptomic changes among SCI7, OVX2_SCI7, and OVX8_SCI7 groups.
Description
SCI7 samples were collected 7 days after T9-T10 clip-compression spinal cord injury. OVX2_SCI7 samples were collected 7 days after SCI performed 2 weeks after ovariectomy.
OVX8_SCI7 samples were collected 7 days after SCI performed 8 weeks after ovariectomy. Gene-level count, TPM, and FPKM matrices are provided as processed data.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE336nnn/GSE336959 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE336959 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1483626 ncbi.nlm.nih.gov/bioproject/PRJNA1483626 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE336959 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |