Excel · study · 2026
Spatial transcriptomic characterization of obesity-associated gene expression programs in endometrial cancer
Listed in NCBI GEO
This study investigates spatial transcriptomic alterations associated with obesity in endometrial cancer using NanoString GeoMx Digital Spatial Profiling.
Description
Tumor samples from obese and non-obese patients were profiled to identify gene expression programs linked to metabolic and oncogenic pathways. NOTE ON RAW DATA COMPLETENESS: 4 FASTQ files (F03_S3_L003_R1, F06_S6_L003_R2, F11_S11_L004_R1, F12_S12_L002_R2) were lost due to a server crash at the USC Center for Advanced Research Computing (CARC) and could not be recovered.
All remaining raw and processed data files are complete and available.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE330nnn/GSE330215 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE330215 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1463168 ncbi.nlm.nih.gov/bioproject/PRJNA1463168 ↗
project · from NCBI GEO
Topics
- Stated by source
- Homo sapiens · Other
- From keywords
- Life Sciences
- Inferred from text
- Cancer 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE330215 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |