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Table · dataset · 2026

Genome assembly and annotation dataset for Raphanus sativus (RSaok_v1)

Listed in figshare and Loughborough Research Repository and GRANTS Data and UP Research Data Repository — shown once because both records carry DOI 10.6084/m9.figshare.32020035.v1

Description

<p dir="ltr">This dataset provides the genome assembly and annotation data supporting the article "Chromosome-scale reference genome assembly of an Aokubi Raphanus sativus doubled haploid line" (Scientific Data).</p><p dir="ltr">Related public records: BioProject PRJDB40705; BioSample SAMD01836765; raw Oxford Nanopore reads, DDBJ Sequence Read Archive DRR1048479; genome assembly and gene annotation, DDBJ/ENA/GenBank AP048637–AP048728.</p><p dir="ltr">Files include the genome assembly (92 sequences, 476.1 Mb), protein-coding gene models (40,973 genes; GFF3) with the corresponding protein sequences, functional annotation, transposable element annotation, Bionano optical genome maps and molecule data, and the PECAT configuration file used for the de novo assembly.

Sequence names and gene IDs correspond to the DDBJ records; see README.txt for details.</p>

Links

Where it is published

Catalogue records · 1

Topics

Provenance · 4 source records, 43 field assertions
SourceKeyLast seenRaw
figshareoai:figshare.com:article/320200355 d agoJSON v1
Loughborough Research Repositoryoai:figshare.com:article/320200355 d agoJSON v1
GRANTS Dataoai:figshare.com:article/320200355 d agoJSON v1
UP Research Data Repositoryoai:figshare.com:article/320200354 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · figshare comconnector:figshare_com@1.0.0
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concepts[field].anzsrc:field:310509mapping · grantsdata jst go jpvocabulary-mapper@1.0.0keywords['Genomics']
concepts[field].anzsrc:field:310509mapping · figshare comvocabulary-mapper@1.0.0keywords['Genomics']
concepts[field].anzsrc:field:310509mapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Genomics']
concepts[field].anzsrc:field:310803mapping · figshare comvocabulary-mapper@1.0.0keywords['Plant cell and molecular biology']
concepts[field].anzsrc:field:310803mapping · grantsdata jst go jpvocabulary-mapper@1.0.0keywords['Plant cell and molecular biology']
concepts[field].anzsrc:field:310803mapping · researchdata up ac zavocabulary-mapper@1.0.0keywords['Plant cell and molecular biology']
concepts[field].anzsrc:field:310803mapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Plant cell and molecular biology']
concepts[field].local:field:astronomymapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:chemistrymapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:chemistrymapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:computer-science-aimapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:computer-science-aimapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:earth-environmentalmapping · grantsdata jst go jpconnector:grantsdata_jst_go_jp@1.0.0
concepts[field].local:field:earth-environmentalmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:earth-environmentalmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:earth-environmentalmapping · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[field].local:field:economics-financemapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:economics-financemapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:engineeringmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:engineeringmapping · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[field].local:field:engineeringmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:humanitiesmapping · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[field].local:field:humanitiesmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:humanitiesmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:life-sciencesmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:life-sciencesmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:life-sciencesmapping · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[field].local:field:life-sciencesmapping · grantsdata jst go jpconnector:grantsdata_jst_go_jp@1.0.0
concepts[field].local:field:materials-sciencemapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:mathematics-statisticsmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:medicine-healthmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:medicine-healthmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:ocean-atmosphericmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:psychology-behavioralmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:social-sciencemapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:social-sciencemapping · researchdata up ac zaconnector:researchdata_up_ac_za@1.0.0
concepts[field].local:field:social-sciencemapping · figshare comconnector:figshare_com@1.0.0
descriptionsource · figshare comconnector:figshare_com@1.0.0/metadata/dc/description
licensesource · figshare comconnector:figshare_com@1.0.0/metadata/dc/rights
publication_datesource · figshare comconnector:figshare_com@1.0.0
titlesource · figshare comconnector:figshare_com@1.0.0/metadata/dc/title