Omics · study · 2026
Ginsenoside F1 improves mitochondrial energy metabolism through regulating gut microbiota-induced bile acid homeostasis [RNA-Seq]
Listed in NCBI GEO
This study investigates the effects of ginsenoside F1 (GF1), a rare ginsenoside, on metabolic syndrome (MetS) in a high‑fat diet (HFD)‑induced mouse model.
Description
Male C57BL/6 mice were fed a HFD for 8 weeks to establish MetS and then treated with GF1 at 50 or 100 mg/kg/day for 12 weeks, alongside chow‑fed controls. Metabolic phenotypes were assessed via indirect calorimetry, serum biochemical assays, histopathological examination, and oral glucose tolerance tests.
To elucidate the underlying mechanisms, we performed a comprehensive multi‑omics and functional analysis, including RNA‑sequencing of liver and subcutaneous white adipose tissue (sWAT), 16S rRNA gene sequencing of gut microbiota from fecal samples, targeted metabolomics for bile acid profiling in liver tissues, flow cytometry for immune cell phenotyping in blood, liver, and stromal vascular fraction of adipose tissue, as well as Western blotting and immunohistochemistry for protein validation.
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This dataset provides extensive transcriptomic, microbiomic, and metabolomic data to evaluate the potential mechanisms of GF1 in modulating energy metabolism, mitochondrial function, inflammation, and gut microbiota–bile acid crosstalk in the context of diet‑induced MetS.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE342nnn/GSE342545 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE342545 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1508181 ncbi.nlm.nih.gov/bioproject/PRJNA1508181 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE342545 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |