Excel · study · 2026
RNA-seq analysis of Schwann cell knockout Bap1 and Kdm6b/Jmjd3
Listed in NCBI GEO
Our previous studies have shown that Polycomb repression is responsible for repression of a latent regeneration program in Schwann cells that becomes activated after nerve injury.
Description
In particular, the Eed subunit of Polycomb Repressive Complex 2 is required to maintain repression of the injury program. Recently we have investigated the role of proteins that reverse polycomb repression : H3K27 demethylases and H2AK119ub1 deubiquitinases.
While deletion of the KDM6B/JMJD3 H3K27 demethylase showed no major effect on Schwann cells, the deletion of the BAP1 deubiquitinase for PRC1-mediated H2AK119 monoubiquitination led to a progressive neuropathy at later time points.The modest phenotypes observed above, led us to hypothesize that these erasers, while enzymatically distinct, may function redundantly in a common gene regulatory pathway.. To test the potentially redundant function of the BAP1 and KDM6B/JMJD3 polycomb erasers, a Schwann cell-specific deletion of Bap1 and Kdm6b revealed a dramatic early onset phenotype after Schwann cell-specific deletion of these two genes, including a dramatic loss of myelinated axons.
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In addition, we find a deregulation of a larger subset of genes associated with H3K27me3 and H2AK119ub1 compared to either individual Schwann cell-specific knockout. Overall, our data support a model in which the proper maintenance of polycomb repression is dependent on the coordinate activities of the JMJD3 H3K27 demethylase and the BAP1 H2AK119 deubiquitinase.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE319nnn/GSE319952 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319952 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1425609 ncbi.nlm.nih.gov/bioproject/PRJNA1425609 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE319952 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |