Omics · study · 2026
DNAmBERT: A Transformer-Based Model for Robust, Non-Invasive Cancer Diagnosis Using DNA Sequence and Methylation Data
Listed in NCBI GEO
Description
We generatedcell-free Reduced Representation Bisulfite Sequencing (cfRRBS) data for 55 samples (7 early-stage lung cancer, 41 late-stage lung cancer, and 7 non-malignant controls) to identify markers for early lung cancer detection. Briefings in Bioinformatics, Volume 27, Issue 5, September 2026, bbag455, doi.org/10.1093/bib/bbag455.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE301nnn/GSE301266 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE301266 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1284375 ncbi.nlm.nih.gov/bioproject/PRJNA1284375 ↗
project · from NCBI GEO
- PubMed 42685313 pubmed.ncbi.nlm.nih.gov/42685313 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Homo sapiens · Methylation profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Cancer 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE301266 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:methylation-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |