Omics · study · 2026
Transient activation of potent progenitor cells is required for spinal cord regeneration
Listed in NCBI GEO
Adult zebrafish exhibit full recovery following spinal cord injury.
Description
Transient sox2 upregulation and expansion of sox2+ progenitors are thought to underlie their regenerative capacity. Here, we determined the molecular identities, stem cell properties, and contributions of sox2+ progenitors during spinal cord repair.
Genetic lineage tracing shows zebrafish spinal progenitors, while quiescent in uninjured tissues, self-renew and differentiate into neurons and glia after injury. By single-cell sequencing, sox2+ cells are heterogeneous and biased towards neuronal or glial fates in naïve and regenerating tissues. By screening for transcription factors that are differentially expressed in acute versus chronic SCI, we find the BTB domain and CNC homology 1 (Bach1) transcription factors control transient progenitor cell activation by acting as dual activators and repressors of sox2 expression.
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These studies catalogue the molecular diversity and contributions of sox2 expressing cells during spinal cord repair and identify a transcriptional regulatory switch by which progenitor cells expand after injury and restore quiescence after regeneration is completed.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE318nnn/GSE318144 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE318144 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1416795 ncbi.nlm.nih.gov/bioproject/PRJNA1416795 ↗
project · from NCBI GEO
Topics
- Stated by source
- Danio rerio · Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE318144 | 8 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:7955 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |