Omics · study · 2026
A De Novo Missense Mutation in IFT122 Confers a Genetic Susceptibility Factor of Idiopathic Pediatric Uveitis via Trio-based Whole-Exome Sequencing [CHIP_FRA1_seq]
Listed in NCBI GEO
Idiopathic pediatric uveitis (IPU) is a leading cause of irreversible vision loss in children; however, its genetic and molecular mechanisms remain unclear.
Description
Herein, trio-based whole-exome sequencing was performed in 28 affected families and targeted sequencing in 1953 sporadic cases from a Han Chinese cohort, identifying a rare missense mutation A773E in intraflagellar transport 122 (IFT122). Functional assays showed deleterious IFT122-E773 increased inflammatory factors secretion and exacerbated barrier function damage both in vivo and vitro.
Further studies using proteomics found that IFT122-E773 increased AP-1 transcription factor subunit (FRA1) expression. In addition, the IFT122-E773 substitution enhanced the interaction with IFT43, thereby activating the MEK/ERK signaling axis. Collectively, this study suggested that IFT122-E773 may increase susceptibility to IPU through activation of the IFT122-MEK/ERK/FRA1 axis.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE335nnn/GSE335073 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE335073 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1477355 ncbi.nlm.nih.gov/bioproject/PRJNA1477355 ↗
project · from NCBI GEO
- PubMed 42684157 pubmed.ncbi.nlm.nih.gov/42684157 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Mass spectrometry 65% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE335073 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:mass-spectrometry | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |