Omics · study · 2026
Ribosome-associated RNA of cardiac endothelial cells purified from endothelial specific RiboTag mice
Listed in NCBI GEO
To assess the expression levels of ribosome-associated RNAs of murine cardiac endothelial cells, hearts were collected from Cdh5-CreERT2;Rpl22tm1.1Psam mice (endothelial specific RiboTag) and ribosomes of endothelial cells containing HA-tagged RPL22 protein were immunoprecipitated.
Description
Then, RNA-seq was performed. The mice underwent coronary ligation 7 days before and only the remote healthy area of the heart was analyzed.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE290nnn/GSE290393 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE290393 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1227881 ncbi.nlm.nih.gov/bioproject/PRJNA1227881 ↗
project · from NCBI GEO
- PubMed 42172320 pubmed.ncbi.nlm.nih.gov/42172320 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Heart 75% · RNA sequencing 65%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE290393 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[anatomy].local:anatomy:heart | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |