Omics · study · 2026
The effect of SATB2 expression on chromatin organization in BEAS2B lung epithelial cells [RNA-seq; SATB2 overexpression]
Listed in NCBI GEO
Even though epigenetic factors contribute to oncogenesis, most human cancer models still assume that disease originates from driver DNA mutations.
Description
Thus, it is still unclear if non-genetic mechanisms are sufficient to trigger malignant transformation. Chronic, low-dose exposure to inorganic arsenic is known to cause lung malignancies, yet arsenic at low levels does not induce point mutations.
Here, we show iAs upregulates Special AT-rich binding protein 2 (SATB2), a chromatin organizer that reprograms cell-specific and/or developmentally-sensitive gene networks, to drive mutant KRAS-like gene expression patterns during arsenic-mediated transformation of BEAS2B cells. Thus, oncogenic pathways can be activated in mammalian cells without pre-disposing mutations in oncogenes or epigenetic regulators.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE278nnn/GSE278212 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE278212 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1166112 ncbi.nlm.nih.gov/bioproject/PRJNA1166112 ↗
project · from NCBI GEO
- PubMed 42343395 pubmed.ncbi.nlm.nih.gov/42343395 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Cancer 75% · Disease 75% · RNA sequencing 65%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE278212 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |