Omics · study · 2026
Transcriptome analysis of neutrophils from recurrent vulvovaginal candidiasis patients and IL-17A-treated healthy controls
Listed in NCBI GEO
Recurrent vulvovaginal candidiasis (RVVC) is a common mucosal infectious disease characterized by recurrent episodes of vulvovaginal inflammation caused by Candida albicans.
Description
Neutrophils are critical innate immune cells in antifungal defense, and IL-17A plays an important regulatory role in neutrophil function. To explore the mechanism by which IL-17A regulates neutrophils in RVVC, we collected vaginal lavage fluid from 3 healthy women and 3 RVVC patients, isolated neutrophils, and treated healthy neutrophils with IL-17A.
Total RNA was extracted from three groups (healthy control group A, healthy+IL-17A group B, and RVVC patient group C), followed by transcriptome sequencing. Through quality control, library construction, sequencing, alignment, gene expression quantification, and differential expression analysis, we aim to identify differentially expressed genes and key pathways related to RVVC pathogenesis and IL-17A regulation of neutrophils.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE335nnn/GSE335122 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE335122 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1477424 ncbi.nlm.nih.gov/bioproject/PRJNA1477424 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Disease 75% · RNA sequencing 65% · Sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE335122 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |