Data · dataset · 2023
Temporal segregation of biosynthetic processes is responsible for metabolic oscillations during the budding yeast cell cycle
Listed in IISH Dataverse
The ZIP files contain analysis files (Python) for the figures, as well as files for the two used models, i.e. the cell mass model and the FBA model.
Description
The analysis is described in detail in the related publication. (2023) Specifically, the different ZIP files contain: Figure1.zip: - Data and script for analysis karyokinesis time; - Data and script for analysis protein synthesis rate with stop-and-respond method (replicate 1); - Data and script for analysis protein synthesis rate with stop-and-respond method (replicate 2); - Data and script for analysis protein synthesis rate with sfGFP.
Figure2.zip: - Data and script for cell surface and cell volume dynamics; - Data and script for analysis lipid synthesis rate (replicate 1); - Data and script for analysis lipid synthesis rate (replicate 1); - Data and script for analysis polysaccharide synthesis rate (replicate 1); - Data and script for analysis polysaccharide synthesis rate (replicate 2); - Data and script for control analysis polysaccharide synthesis rate.
Read the rest (1 more)
Figure3.zip: - Cell mass model. Figure4.zip: - Cell cycle FBA model; - Data and script for experiment with glucose analog uptake (replicate 1); - Data and script for experiment with glucose analog uptake (replicate 2); - Data and script for glycolytic flux sensor experiment. Figure5.zip: - Data and script for analysis of NADPH oscillations; - Data and script for microaerobic conditions and storage mutants.
Links
Where it is published
- Dataverse dataset page dataverse.nl/dataset.xhtml?persistentId=doi%3A10.34894%2FXPYC7Y ↗
landing page · from datasets iisg amsterdam
- DOI doi.org/10.34894/xpyc7y ↗
DOI / persistent id · from datasets iisg amsterdam
Catalogue records · 1
- Dataverse API dataverse.nl/api/datasets/:persistentId/?persistentId=doi%3A10.34894%2FXPYC… ↗
metadata API · from datasets iisg amsterdam
Topics
- Stated by source
- Chemistry · Medicine, Health and Life Sciences
- From keywords
- Chemistry · Life Sciences · Medicine & Health · Saccharomyces cerevisiae
- Inferred from text
- Cell metabolism 76%
Provenance · 1 source records, 13 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| IISH Dataverse | doi:10.34894/XPYC7Y | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:field:310103 | enrichment · datasets iisg amsterdam | taxonomy-embedding@1.1.0 | title+keywords+description (76%) |
| concepts[field].dataverse_subject:chemistry | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[field].dataverse_subject:medicine-health-and-life-sciences | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[field].local:field:chemistry | mapping · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[field].local:field:life-sciences | mapping · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /subjects |
| concepts[organism].NCBITaxon:4932 | mapping · datasets iisg amsterdam | vocabulary-mapper@1.0.0 | keywords['Saccharomyces cerevisiae'] |
| created_date | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | |
| description | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /description |
| publication_date | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | |
| title | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | /name |
| updated_date | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 | |
| version_label | source · datasets iisg amsterdam | connector:datasets_iisg_amsterdam@1.0.0 |