Omics · dataset · 2024
Metabologenomic analysis identifies elevated serum sphingosine-1-phosphate as a pathogenic driver of Ménière’s disease
Listed in Teesside University Research Data Repository
This study enrolled a total of 61 Meniere's disease (MD) patients and 31 healthy controls, all Chinese Han ancestry.
Description
Our cohort comprised 28 males (45.90%) with a mean age at diagnosis of 53.5 years (range 26-76 years). To investigate the comprehensive molecular underpinnings of MD, we employed an integrative analysis framework: (1) We performed whole-exome sequencing (WES) on 49 patients and 8 controls to identify recurrently deleterious variants; (2) We conducted metabolomics profiling on 58 patients and 25 controls to uncover metabolic alterations associated with MD; (3) By integrating WES and metabolomics data, we established genotype-metabolite associations; (4) We validated our patient-derived insights using MD mouse model with transcriptome and metabolome data; (5) We further elucidated the dynamics of key metabolic pathways with three public single-cell RNA-seq datasets as well as a bulk MD patient peripheral blood mononuclear cells (PBMCs) dataset.
Links
Where it is published
- DOI doi.org/10.17632/2dzmgdmwyz.2 ↗
DOI / persistent id · from researchdata tees ac uk
Catalogue records · 1
- OAI-PMH record data.mendeley.com/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Adata… ↗
metadata API · from researchdata tees ac uk
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · RNA sequencing · Social Science
- Inferred from text
- Bioinformatics and computational biology 71% · Disease 75% · Sequencing 75% · Single-cell RNA sequencing 65%
Provenance · 1 source records, 15 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Teesside University Research Data Repository | oai:data.mendeley.com/2dzmgdmwyz.2 | 9 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · researchdata tees ac uk | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:group:3102 | enrichment · researchdata tees ac uk | taxonomy-embedding@1.0.0 | title+keywords+description (71%) |
| concepts[field].local:field:earth-environmental | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:engineering | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| concepts[modality].local:modality:rna-seq | mapping · researchdata tees ac uk | vocabulary-mapper@1.0.0 | keywords['RNA Sequencing'] |
| concepts[modality].local:modality:sequencing | enrichment · researchdata tees ac uk | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · researchdata tees ac uk | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/description |
| license | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | |
| title | source · researchdata tees ac uk | connector:researchdata_tees_ac_uk@1.0.0 | /metadata/dc/title |