Data · study · 2026
The pseudouridine epitranscroptome of PA-ψ-seq HepAD38 tet- cell line
Listed in NCBI GEO
Persistent HBV replication remodels epitranscriptomic modifications in hepatocytes.
Description
Pseudouridine (Ψ) is a prevalent RNA modification regulating RNA stability and translation, yet the landscape of pseudouridylation during HBV replication remains unclear. Herein, we applied Photo-Crosslinking-Assisted pseudouridine sequencing (PA-Ψ-seq) to profile the transcriptome-wide pseudouridine epitranscriptome in HepAD38 tet⁻ cells with active HBV replication.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE341nnn/GSE341816 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE341816 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1504140 ncbi.nlm.nih.gov/bioproject/PRJNA1504140 ↗
project · from NCBI GEO
Topics
- Stated by source
- Homo sapiens · Other
- From keywords
- Life Sciences
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE341816 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |