An integrated knowledge, expression and genetic association resource for human transposable elements

<pre><pre>Records of human transposable elements across five layers: literature-derived typed entities and directed relationships with PMID provenance; the TE catalogue and classification taxonomy; reference-genome repeat occurrence annotations; normalized expression matrices with context summaries; context-specific co-expression networks; and strict TE-variant overlap plus variant-gene-tissue association tables derived from GTEx v11.

Representative and consensus sequences are included in transposable_element_reference_annotations.json, which holds one record per reference entry with the sequence, description, classification, keywords and references of that entry.<br><br>See deposit_manifest.json for per-file sizes and SHA-256 checksums. Each archive also contains README.md and a copy of deposit_manifest.json.</pre></pre><p></p>