Omics · study · 2026
In vivo DNA damage protection during cell migration across confining embryonic tissue environments
Listed in NCBI GEO
In physiology and in disease, cells often migrate through narrow spaces, such as leukocytes undergoing diapedesis or cancer cells during dissemination.
Description
Cultured cells under physical confinement can experience mechanical stress due to deformation of the nucleus. Nuclear deformation leads to loss of nuclear integrity and DNA damage, and it has been proposed to underlie cancer initiation and progression.
In vivo, the consequences of physical confinement on physiological cell migration remain poorly understood. Here, we use the zebrafish neural crest as an in vivo model to address how multipotent embryonic cells respond to physical confinement during developmental migration. By measuring the size of extracellular spaces, we found that the level of tissue scale confinement increases from head to tail along the embryonic antero-posterior axis.
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Nuclear morphometrics analysis shows that neural crest experience dramatic nuclear deformation during their migration between adjacent tissues, which quantitatively scales with tissue confinement. By using complementary genetic and mechanical strategies to ablate the surrounding tissue, we observe a rescue of nuclear deformation in vivo. Surprisingly, we found that while deformation of the neural crest nucleus causes nucleo-cytoplasmic leakage, it does not cause nuclear envelope rupture or increase DNA damage even upon extreme deformations.
Instead, confined migratory neural crest show decreased LaminB2 at the nuclear envelope. By perturbing LaminB2 expression levels, we discover that loss of LaminB2 facilitates fast recovery from deformation, while sustained expression of LaminB2 results in persistently deformed nuclei, highlighting a role for LaminB2 in nuclear shape deformability. Using a photoconversion and RNA-seq approach, we uncover upregulation of a large network of DNA repair genes in confined trunk neural crest, suggesting these stem cells might be resistant to confinement-induced mechanical stresses.
In summary, we establish the neural crest as a physiological framework, uncovering dynamic adaptations to tissue confinement in vivo.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE330nnn/GSE330051 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE330051 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1463003 ncbi.nlm.nih.gov/bioproject/PRJNA1463003 ↗
project · from NCBI GEO
Topics
- Stated by source
- Danio rerio · Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- Cancer 75% · Disease 75% · RNA sequencing 65%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE330051 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:7955 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |